# Copyright (c) 2008-2023 the MRtrix3 contributors.
#
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at http://mozilla.org/MPL/2.0/.
#
# Covered Software is provided under this License on an "as is"
# basis, without warranty of any kind, either expressed, implied, or
# statutory, including, without limitation, warranties that the
# Covered Software is free of defects, merchantable, fit for a
# particular purpose or non-infringing.
# See the Mozilla Public License v. 2.0 for more details.
#
# For more details, see http://www.mrtrix.org/.

# Lookup table for MRtrix command labelconvert
# Extracts the relevant grey matter parcellations from the default FreeSurfer segmentation (desikan_killiany), but segmentations are summarised into lobes and subcortical areas
# Cingulate regions are combined to produce their own separate 'cingulate lobe' nodes
# This file is intended to be used for the label conversion process; the corresponding lookup table for interpreting the resulting labels is: fs2lobes_cingsep_labels.txt


0     Unknown

4     ctx-lh-bankssts
5     ctx-lh-caudalanteriorcingulate
1     ctx-lh-caudalmiddlefrontal
3     ctx-lh-cuneus
4     ctx-lh-entorhinal
4     ctx-lh-fusiform
2     ctx-lh-inferiorparietal
4     ctx-lh-inferiortemporal
5     ctx-lh-isthmuscingulate
3     ctx-lh-lateraloccipital
1     ctx-lh-lateralorbitofrontal
3     ctx-lh-lingual
1     ctx-lh-medialorbitofrontal
4     ctx-lh-middletemporal
4     ctx-lh-parahippocampal
1     ctx-lh-paracentral
1     ctx-lh-parsopercularis
1     ctx-lh-parsorbitalis
1     ctx-lh-parstriangularis
3     ctx-lh-pericalcarine
2     ctx-lh-postcentral
5     ctx-lh-posteriorcingulate
1     ctx-lh-precentral
2     ctx-lh-precuneus
5     ctx-lh-rostralanteriorcingulate
1     ctx-lh-rostralmiddlefrontal
1     ctx-lh-superiorfrontal
2     ctx-lh-superiorparietal
4     ctx-lh-superiortemporal
2     ctx-lh-supramarginal
1     ctx-lh-frontalpole
4     ctx-lh-temporalpole
4     ctx-lh-transversetemporal
#x    ctx-lh-insula

6     Left-Cerebellum-Cortex

7     Left-Thalamus
7     Left-Thalamus-Proper
7     Left-Caudate
7     Left-Putamen
7     Left-Pallidum
7     Left-Hippocampus
7     Left-Amygdala
7     Left-Accumbens-area

8     Right-Thalamus
8     Right-Thalamus-Proper
8     Right-Caudate
8     Right-Putamen
8     Right-Pallidum
8     Right-Hippocampus
8     Right-Amygdala
8     Right-Accumbens-area

9     Right-Cerebellum-Cortex

11    ctx-rh-bankssts
10    ctx-rh-caudalanteriorcingulate
14    ctx-rh-caudalmiddlefrontal
12    ctx-rh-cuneus
11    ctx-rh-entorhinal
11    ctx-rh-fusiform
13    ctx-rh-inferiorparietal
11    ctx-rh-inferiortemporal
10    ctx-rh-isthmuscingulate
12    ctx-rh-lateraloccipital
14    ctx-rh-lateralorbitofrontal
12    ctx-rh-lingual
14    ctx-rh-medialorbitofrontal
11    ctx-rh-middletemporal
11    ctx-rh-parahippocampal
14    ctx-rh-paracentral
14    ctx-rh-parsopercularis
14    ctx-rh-parsorbitalis
14    ctx-rh-parstriangularis
12    ctx-rh-pericalcarine
13    ctx-rh-postcentral
10    ctx-rh-posteriorcingulate
14    ctx-rh-precentral
13    ctx-rh-precuneus
10    ctx-rh-rostralanteriorcingulate
14    ctx-rh-rostralmiddlefrontal
14    ctx-rh-superiorfrontal
13    ctx-rh-superiorparietal
11    ctx-rh-superiortemporal
13    ctx-rh-supramarginal
14    ctx-rh-frontalpole
11    ctx-rh-temporalpole
11    ctx-rh-transversetemporal
#x    ctx-rh-insula

